Some R packages I find useful:
- vegan (great statistics functions for community ecology data analysis)
- microeco (wrapper for microbial ecology data analysis using meco data)
- file2meco (phyloseq/qiime to meco conversion)
- ggpicrust2 (PICRUSt2 output analysis & visualization made easy)
- fantaxtic (nested bar plots for phyloseq data)
- maaslin3 (microbiome multivariate association with linear models)
Work in progress...
Work in progress...